Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs12697136 chr5:54340718 A/G 4.35E-8 174 21.3 29.28 20.33 KM Plot
UCEC rs12751707 chr1:33728953 A/G 6.86E-5 169 22.68 25.25 20.8 KM Plot
UCEC rs12785450 chr11:93596420 A/G 9.88E-12 174 4.33 21.98 22.57 KM Plot
UCEC rs12894890 chr14:22307795 C/A 8.8E-5 170 22.8 20.17 10.93 KM Plot
UCEC rs12941700 chr17:30185022 A/G 6.15E-6 174 15.77 20.93 22.7 KM Plot
UCEC rs12941779 chr17:65061170 G/A 8.23E-6 173 22.67 22.57 16.2 KM Plot
UCEC rs13001918 chr2:180173005 C/T 2.48E-11 168 25.07 18.38 4.33 KM Plot
UCEC rs13025484 chr2:98346463 G/C 3.3E-13 171 22.8 20.17 2.4 KM Plot
UCEC rs13040843 chr20:60332858 G/A 2.54E-11 168 21.55 25.67 2.2 KM Plot
UCEC rs13050727 chr21:44076869 C/T 5.54E-12 173 22.57 24.07 2.3 KM Plot
UCEC rs13054825 chr22:49431323 A/G 7.44E-12 174 4.33 18.35 22.8 KM Plot
UCEC rs1307489 chr1:10507236 A/G 0.000108 172 20.33 21 22.7 KM Plot
UCEC rs1307493 chr1:10509409 C/T 0.000111 172 20.33 21.07 22.67 KM Plot
UCEC rs1307494 chr1:10509703 C/T 9.96E-5 174 20.33 20.93 22.67 KM Plot
UCEC rs13133016 chr4:57221958 A/T 1.26E-5 174 32.2 21.55 19.1 KM Plot